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Michael Love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
4.6 years ago
cp1015
• 0
0
votes
4
replies
737
views
DESeq2 Design Formula
DESeq2
michael love
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.1k
views
DESeq2 PCA plotting
deseq2
michael love
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
sam.far.7
• 0
1
vote
11
replies
1.6k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
Ashu
▴ 10
2
votes
3
replies
1.5k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
ap874
• 0
5
votes
10
replies
11k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
pvd2107
▴ 30
6 results • Page
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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